1. Attachments are working again! Check out this thread for more details and to report any other bugs.

SARS-CoV-2 Coronavirus (COVID-19)

Discussion in 'Environmental Discussion' started by tochatihu, Jan 26, 2020.

  1. Salamander_King

    Salamander_King Senior Member

    Joined:
    Nov 8, 2015
    10,963
    8,839
    0
    Location:
    New England
    Vehicle:
    Other Hybrid
    Model:
    N/A
    In principal what you have described for the "antibody test" is the technic of using an antibody to detect the presence of antigen (a substance that binds antibody). But to my knowledge, most of the "antibody test" we have been talking about is a serological test on the human population to detect the presence of antibody (IgG subclass but may include IgM subclass for the early phase of the immune response) against SARS-CoV-2. A distinction needs to be made for those two different antibody tests.

    As for the PCR test, I am pretty sure that none of currently in use RT-PCR for the diagnosis of COVID-19 uses "gel electrophoresis" for the detection of amplified DNA. They now use a platform that is "real-time" so that amplified DNA can be detected in situ in the plate on a PCR machine, mostly using fluorescent dye incorporation.

    Plasmapheresis and using tainted plasma for other human treatment is one sure way to spread the virus. AIDS epidemic in many countries was accelerated precisely by that mode of transmission.
    The AIDS epidemic and commercial plasmapheresis. - PubMed - NCBI
     
    #1401 Salamander_King, Apr 4, 2020
    Last edited: Apr 4, 2020
    iplug and Trollbait like this.
  2. bwilson4web

    bwilson4web BMW i3 and Model 3

    Joined:
    Nov 25, 2005
    27,123
    15,389
    0
    Location:
    Huntsville AL
    Vehicle:
    2018 Tesla Model 3
    Model:
    Prime Plus
    We agree but I we're getting pleas for blood donation and their only COVID-19 claim is 'you won't catch it.' But I throughly agree with your analysis that blood donations from COVID-19 recovered or asymptomatic individuals has a significant risk. Just I don't think they are screening the donors expect from the lame, 20 questions survey.

    Now I suspect that plasma could be treated to kill any virus while preserving the antibodies. My thinking is low or elevated temperature might denature the virus. Going after the plasmid coating might also work without risking the antibodies. But these are my personal speculations.

    Bob Wilson
     
  3. Trollbait

    Trollbait It's a D&D thing

    Joined:
    Feb 7, 2006
    21,712
    11,314
    0
    Location:
    eastern Pennsylvania
    Vehicle:
    Other Non-Hybrid
    The one that comes to mind is to avoid those that could have metal or plastic directly supporting the filter media just to have easier time cutting.

    Thanks. My description came from what I worked with in the lab years ago.
     
  4. Salamander_King

    Salamander_King Senior Member

    Joined:
    Nov 8, 2015
    10,963
    8,839
    0
    Location:
    New England
    Vehicle:
    Other Hybrid
    Model:
    N/A
    The temperature that would denature virus would effectively denature antibody or immunoglobulin which are made of mostly protein moiety. There are other effective means of isolating and purifying immunoglobulin from plasma. But I just can not see FDA would ever approve the use of such antibody collected even purified from actively infected patients to be used for therapy for others.

    I am not an expert on the subject of immunotherapy, but the standard method of producing therapeutic antibodies are using animal, mostly lab or farm animals such as rabbit, chicken, cow, goat, for polyclonal antibodies, or in hybridoma cell culture originating from mice for monoclonal antibodies.

    Note of caution is that even such antibodies can be mass-produced, it's therapeutic use may still be difficult in light of the fact that there exist many challenges and hindrances for the development of effective immunotherapy reagents for other known infectious disease.
    Therapeutic antibodies for infectious diseases
     
  5. Trollbait

    Trollbait It's a D&D thing

    Joined:
    Feb 7, 2006
    21,712
    11,314
    0
    Location:
    eastern Pennsylvania
    Vehicle:
    Other Non-Hybrid
    The plasma that is being collected used is coming from recovered patients. There is still risk of live virus still being present in their blood, but presumably, the plasma is being given to those already with a high virus load; the sick.
     
    bwilson4web likes this.
  6. Mark57

    Mark57 2021 Tesla Model 3 LR AWD

    Joined:
    Aug 14, 2009
    2,945
    2,735
    0
    Location:
    OK
    Vehicle:
    Other Electric Vehicle
    Model:
    N/A
    Regarding Covid-19 research. For those of you that may not fully understand what's being done with all the thousands of people contributing their spare computer time to Folding@Home and the Rosetta@home projects, here is an April 3rd article that shows and explains some of the progress made recently. There is hope.

    Capturing the Covid-19 Demogorgon (aka Spike) in action
     
  7. tochatihu

    tochatihu Senior Member

    Joined:
    Apr 10, 2004
    8,995
    3,507
    0
    Location:
    Kunming Yunnan China
    Vehicle:
    2001 Prius
    "pretty sure that none of currently in use RT-PCR for the diagnosis of COVID-19 uses "gel electrophoresis" @1402

    I'm sure you are correct. pouring gels that do not make smileys is another developed skill, and always takes time.


    "Now I suspect that plasma could be treated to kill any virus while preserving the antibodies" @1403
    Stop suspecting that.
     
    bwilson4web likes this.
  8. spiderman

    spiderman wretched

    Joined:
    Jul 5, 2009
    7,543
    1,558
    0
    Location:
    Alaska
    Vehicle:
    2010 Prius
    Model:
    II
    It's the potential I am guessing. At the moment its just a bad flu season.

    This thing was designed to be nasty fast from what I gather.
     
  9. tochatihu

    tochatihu Senior Member

    Joined:
    Apr 10, 2004
    8,995
    3,507
    0
    Location:
    Kunming Yunnan China
    Vehicle:
    2001 Prius
    Two example electrophresis gel from internet. Straight and narrow lines in each lane are what we're aiming for. One looks like an xray of the pile left behind after a person walked through an airplane propeller. Or something.

    Electrophoretic gels.png
     
    Robert Holt likes this.
  10. fuzzy1

    fuzzy1 Senior Member

    Joined:
    Feb 26, 2009
    17,105
    10,039
    90
    Location:
    Western Washington
    Vehicle:
    Other Hybrid
    Model:
    N/A
    Hospital-wise, it is much worse than a normal bad flu season, with patients needing substantially longer support. Flu shouldn't be stacking patients head-to-toe on the hallway floors.

    Deathrate-wise, a bad flu season should average 500-ish deaths per day in the U.S., less in the smaller countries. A good season, maybe one-third that rate. For Covid-19, not just the U.S., but also smaller Spain, Italy, France, and UK all higher than that now.
     
    #1410 fuzzy1, Apr 4, 2020
    Last edited: Apr 4, 2020
  11. tochatihu

    tochatihu Senior Member

    Joined:
    Apr 10, 2004
    8,995
    3,507
    0
    Location:
    Kunming Yunnan China
    Vehicle:
    2001 Prius
    IF US escapes with fatalities similar to bad year of seasonal influenza, another difference is that fatalities are very compressed in time and place. Hospitals and mortuary facilities are very stressed in those places.
     
    Robert Holt likes this.
  12. bisco

    bisco cookie crumbler

    Joined:
    May 11, 2005
    107,693
    48,945
    0
    Location:
    boston
    Vehicle:
    2012 Prius Plug-in
    Model:
    Plug-in Base
    especially in a few key cities.

    some things we never hear about the flu:

    lack of personal protection equipment

    hospital staff being infected at a high rate

    lack of ventilators and icu space

    closing hospitals to all non essential medical services due to high infection rate

    deaths sweeping through senior residences

    deaths sweeping through families
     
    Robert Holt likes this.
  13. tochatihu

    tochatihu Senior Member

    Joined:
    Apr 10, 2004
    8,995
    3,507
    0
    Location:
    Kunming Yunnan China
    Vehicle:
    2001 Prius
    Anyone have info on flu vaccination rates for US folks >70 yrs? My guess is higher than population overall.

    Bisco, unretire and look that up.
     
    hill, bwilson4web and Merkey like this.
  14. Salamander_King

    Salamander_King Senior Member

    Joined:
    Nov 8, 2015
    10,963
    8,839
    0
    Location:
    New England
    Vehicle:
    Other Hybrid
    Model:
    N/A
    Here it is.
    Estimates of Influenza Vaccination Coverage among Adults—United States, 2017–18 Flu Season | FluVaxView | Seasonal Influenza (Flu) | CDC
    For the 2017-18 season, flu vaccination coverage increased with age, from 26.9% among adults 18-49 years to 59.6% among adults ≥65 years (Figure 2).
    Flu Vaccination Coverage, United States, 2018–19 Influenza Season | FluVaxView | Seasonal Influenza (Flu) | CDC
    Coverage for 2018–19 was higher for every age group compared with the 2017–18 season. As observed each flu season, flu vaccination coverage among adults increased with increasing age.

    Screenshot 2020-04-04 at 10.10.39 PM.png
     
    #1414 Salamander_King, Apr 4, 2020
    Last edited: Apr 4, 2020
  15. fuzzy1

    fuzzy1 Senior Member

    Joined:
    Feb 26, 2009
    17,105
    10,039
    90
    Location:
    Western Washington
    Vehicle:
    Other Hybrid
    Model:
    N/A
    Our epicentric nursing home had 1/3rd of its residents die from this disease, in 3 weeks. Bad flus don't do that.
     
    bwilson4web likes this.
  16. tochatihu

    tochatihu Senior Member

    Joined:
    Apr 10, 2004
    8,995
    3,507
    0
    Location:
    Kunming Yunnan China
    Vehicle:
    2001 Prius
  17. Salamander_King

    Salamander_King Senior Member

    Joined:
    Nov 8, 2015
    10,963
    8,839
    0
    Location:
    New England
    Vehicle:
    Other Hybrid
    Model:
    N/A
    #1417 Salamander_King, Apr 4, 2020
    Last edited: Apr 4, 2020
    Merkey likes this.
  18. tochatihu

    tochatihu Senior Member

    Joined:
    Apr 10, 2004
    8,995
    3,507
    0
    Location:
    Kunming Yunnan China
    Vehicle:
    2001 Prius
    I recall a veterinarian office with a cutaway model of dog heart thus infested. It was gross. Presumably provided free by manufacturer to increase sales.
     
  19. SFO

    SFO Senior Member

    Joined:
    Feb 7, 2017
    5,286
    4,225
    0
    Location:
    Northern California
    Vehicle:
    2007 Prius
    Model:
    N/A
    [​IMG]

    Nothing to see here...
     
    spiderman and Raytheeagle like this.
  20. fuzzy1

    fuzzy1 Senior Member

    Joined:
    Feb 26, 2009
    17,105
    10,039
    90
    Location:
    Western Washington
    Vehicle:
    Other Hybrid
    Model:
    N/A