Another EGR/Intake/something shaking problem

this is my first post here and I really need help. I've read every thread about this that I can find and I still can't figure it out.

2011 Prius with 180k miles. Recently started shaking only at start up and only some of the time. Threw a code once and it was a misfire and coil 2 failure. Toyota charged me 300 bucks and 3 days later it started again but this time on every start up of the car for about 15 seconds. I watched nutzaboutboltz video and cleaned the intake manifold and little holes above which none of which were bad. I also cleaned the egg cooler which also wasn't that bad considering this is the first time I have done this.

Anyway, that was a month ago exactly and it ran great till 3 days ago it started back but a little different. It still does it every time I start the car but now it shakes bad while driving and any time it switches over to the gas engine. It lurches and doesn't really catch for a few seconds then it is fine once I'm over about 12mph.

I figured it wasn't the egr system since I had just cleaned that but when I disconnected the sensor under the hood it started with barely half a second of a rattle then ran fine. I drove it unconnected down the road a mile and back and it ran fine. Connected egr and the shaking is back worse than ever.

I took everything back apart and the intake was clean except for a bit of oil oil the bottom and the egr cooler also was still very clean so I have no idea what the problem is or what to do. If anyone could help it would be greatly appreciated!

Thanks, Caleb